Difference between revisions of "Flexbar"
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{{Bioinformatics application | {{Bioinformatics application | ||
|sw summary=Flexible barcode detection and adapter removal | |sw summary=Flexible barcode detection and adapter removal | ||
| − | |bio domain=Next Generation Sequencing | + | |bio domain=Next Generation Sequencing, Genomics |
| − | |bio method= | + | |bio method=Sequence analysis |
|bio tech=Illumina, 454, SOLiD | |bio tech=Illumina, 454, SOLiD | ||
|maintained=Yes | |maintained=Yes | ||
Revision as of 10:30, 19 September 2012
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Application data |
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| Biological application domain(s) | Next Generation Sequencing, Genomics |
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| Principal bioinformatics method(s) | Sequence analysis |
| Technology | Illumina, 454, SOLiD |
| Maintained? | Yes |
| Input format(s) | Fasta, Fastq, Csfasta, Csfastq |
| Output format(s) | Fasta, Fastq, Csfasta, Csfastq |
| Programming language(s) | C++ |
| Software libraries | SeqAn, TBB |
| Licence | GPLv3 |
| Operating system(s) | Linux 64, Mac OS X, Windows |
Summary: Flexible barcode detection and adapter removal
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Description
Flexbar - flexible barcode detection and adapter removal, former name FAR, is an ideal tool to preprocess sequencing data. It demultiplexes barcoded runs and removes adapter sequences. Flexbar increases mapping rates and improves genome and transcriptome assemblies. It supports sequencing data in fasta/q and csfasta/q format from Illumina, Roche 454, or SOLiD platform. Parameter names changed in Flexbar. Please review scripts.
Links
- Flexbar Homepage [ edit link ]
- Flexbar Manual [ edit link ]
- Flexbar Publication full text [ edit link ]
References
To add a reference for Flexbar, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "Flexbar" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
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