GenomeView

Application data
Created by	Thomas Abeel
Biological application domain(s)	Genomics, Comparative Genomics, Comparative transcriptomics, Transcriptomics, Gene annotation retrieval, Quality Control, Sequencing, Sequence analysis
Principal bioinformatics method(s)	Visualization, Alignment viewer, multiple sequence alignment viewer, Viewer, Genome browser
Technology	Any
Created at	VIB, Department of Plant Systems Biology Broad Institute of MIT and Harvard
Maintained?	Yes
Input format(s)	(Compressed) FASTA, BAM, BED, BEDGraph, Blast output, Clustalw, EMBL, FASTA, GFF, GTF, Multi-fasta, WIG
Output format(s)	gff3, embl
Software features	Visualization of a multitude of genomics data
Programming language(s)	Java
Software libraries	SAMtools, JAnnot, BigBed-java, BigWig-java
Licence	GPL
Operating system(s)	platform-independent

Summary: GenomeView is a next-generation stand-alone genome browser and editor initiated in the BSB group at VIB and currently developed at Broad Institute. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Many standard file formats are supported and new functionality can be added using a plugin system.

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Links

• GenomeView Homepage [ edit link ]
• GenomeView Manual [ edit link ]
• GenomeView Mailing list [ edit link ]
• GenomeView Publication full text [ edit link ]

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References

1. . 2011. Nucleic Acids Research

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