GenomeView
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Application data |
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| Created by | Thomas Abeel |
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| Biological application domain(s) | Genomics, Comparative genomics, Transcriptomics, Quality control, Sequencing, Sequence analysis |
| Principal bioinformatics method(s) | Visualisation, Sequence alignment visualisation, Plotting and rendering, Genome visualisation, Data retrieval |
| Technology | Any |
| Created at | VIB, Department of Plant Systems Biology
Broad Institute of MIT and Harvard |
| Maintained? | Yes |
| Input format(s) | (Compressed) FASTA, BAM, BED, BEDGraph, Blast output, Clustalw, EMBL, FASTA, GFF, GTF, Multi-fasta, WIG |
| Output format(s) | gff3, embl |
| Software features | Visualisation of a multitude of genomics data |
| Programming language(s) | Java |
| Software libraries | SAMtools, JAnnot, BigBed-java, BigWig-java |
| Licence | GPL |
| Operating system(s) | platform-independent |
| Contact: | thomas@abeel.be |
Summary: GenomeView is a next-generation stand-alone genome browser and editor initiated in the BSB group at VIB and currently developed at Broad Institute. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Many standard file formats are supported and new functionality can be added using a plugin system.
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Links
- GenomeView Homepage [ edit link ]
- GenomeView Manual [ edit link ]
- GenomeView Mailing list [ edit link ]
- GenomeView Publication full text [ edit link ]
References
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