MIP Scaffolder

Application data
Created by	L. Salmela
Principal bioinformatics method(s)	Scaffolding
Technology	SOLiD, Illumina
Created at	University of Helsinki
Maintained?	Yes
Input format(s)	FASTQ, FASTA
Programming language(s)	C++, Perl
Software libraries	lp_solve, lemon
Operating system(s)	Linux

Summary: MIP Scaffolder is a program for scaffolding contigs produced by fragment assemblers using mate pair data.

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Links

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