Hybrid-SHREC

Application data
Principal bioinformatics method(s)	Sequence error correction
Technology	Illumina, 454, ABI SOLiD
Maintained?	Maybe
Input format(s)	FASTA
Programming language(s)	Java

Summary: Improves sequence data quality using information from multiple platforms.

"Error: no local variable "counter" was set." is not a number.

Description

Hybrid SHREC is an error correction algorithm for correcting reads from various DNA sequencing platforms. They provide two versions of the algorithm: one that performs the error correction in base space and is limited to normal base space reads and another that performs error correction in the color space of the SOLiD sequencing technology by Applied Biosystems. The latter version can correct a mixed set of base space and color space reads.

Links

• Hybrid-SHREC Homepage [ edit link ]

• Add a Link

References

1. . 2010. Bioinformatics

To add a reference for Hybrid-SHREC, enter the PubMed ID in the field below and click 'Add'.

 

[ edit box ]

Search for "Hybrid-SHREC" in the SEQanswers forum / BioStar or:

Web Search	Wiki Sites	Scientific
Google. Bioinformatics journals Clusty	WikiPedia MetaBase BioPedia OpenWetWare bifx wiki	PubMed Europe PMC ScientificCommons.org