FreClu

Application data
Biological application domain(s)	RNA-Seq alignment
Principal bioinformatics method(s)	Read mapping
Maintained?	Maybe

Summary: a frequency-based, de novo short-read clustering method that organizes erroneous short sequences originating in a single abundant sequence into a tree structure; in this structure, each “child” sequence is considered to be stochastically derived from its more abundant “parent” sequence with one mutation through sequencing errors. The root node is the most frequently observed sequence that represents all erroneous reads in the entire tree, allowing the alignment of the reliable representative read to the genome without the risk of mapping erroneous reads to false-positive positions.

"Error: no local variable "counter" was set." is not a number.

Links

• FreClu Homepage [ edit link ]

• Add a Link

References

1. . 2009. Genome Research

To add a reference for FreClu, enter the PubMed ID in the field below and click 'Add'.

 

[ edit box ]

Search for "FreClu" in the SEQanswers forum / BioStar or:

Web Search	Wiki Sites	Scientific
Google. Bioinformatics journals Clusty	WikiPedia MetaBase BioPedia OpenWetWare bifx wiki	PubMed Europe PMC ScientificCommons.org