Application data |
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Created by | Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, Antonescu C, Salzberg SL |
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Biological application domain(s) | Alignment |
Principal bioinformatics method(s) | Alignments |
Created at | The Institute for Genomic Research, Maryland |
Maintained? | Maybe |
Input format(s) | FASTA |
Operating system(s) | POSIX |
Summary: MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence.
"Error: no local variable "counter" was set." is not a number.
Link: http://mummer.sourceforge.net/ Category: Alignment
[PMID http://www.ncbi.nlm.nih.gov/pubmed/19389736] claims to be interface equivalent, and more memory efficient.
MUMmer is released as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.