BBSeq

Application data
Biological application domain(s)	RNA-Seq quantification
Maintained?	Maybe
Programming language(s)	R

Summary: Tool for analyzing RNA-Seq data to analyze gene expression

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Description

BBSeq incorporates two approaches: (i) a simple beta-binomial generalized linear model, which has not been extensively tested for RNA-Seq data, and (ii) an extension of an expression mean-variance modeling approach to RNA-Seq data, involving modeling of the overdispersion as a function of the mean. The approaches are flexible, allowing for general handling of discrete experimental factors and continuous covariates.

Links

• BBSeq Source code [ edit link ]

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References

1. . 2011. Bioinformatics

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