RUbioSeq

Application data
Created by	Rubio-Camarillo M
Biological application domain(s)	Exome analysis, Copy number estimation, Sequencing, Epigenetics, DNA methylation
Principal bioinformatics method(s)	Variant calling
Technology	Illumina, ABI SOLiD
Created at	Bioinformatics Unit, Spanish National Cancer Research Centre (CNIO)
Maintained?	Yes
Input format(s)	FASTQ
Output format(s)	VCF
Programming language(s)	Perl
Operating system(s)	UNIX

Summary: RUbioSeq has been developed to facilitate the primary and secondary analysis of resequencing projects by providing an integrated software suite of parallelized pipelines to detect exome variants (SNVs and CNVs) and to perform Bisulfite-seq analyses automatically. RUbioSeq's variant analysis results have been already validated and published. AVAILABILITY: http://rubioseq.sourceforge.net/ 200px|right

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Links

• RUbioSeq Homepage [ edit link ]
• RUbioSeq Homepage [ edit link ]
• RUbioSeq Homepage [ edit link ]
• RUbioSeq Publication full text [ edit link ]

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References

1. . 2013. Bioinformatics (Oxford)

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