NextGENe

Application data
Biological application domain(s)	De novo sequencing, Metagenomics, SNP discovery, InDel discovery, Targeted resequencing
Technology	Illumina, 454, ABI SOLiD
Created at	SoftGenetics LLC
Maintained?	Yes
Input format(s)	FASTQ, FASTA, Scarf, FNAQual, CSFASTA/CSQUAL (ABI SOLiD)
Software features	Unique condensation tool, Data Visualisation, very flexible
Programming language(s)	C++
Licence	Commercial
Operating system(s)	Windows

Summary: de novo and reference assembly of Roche/454, Illumina and SOLiD data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before assembly which reduces sequencing errors. Requires Win or MacOS.

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Link: http://softgenetics.com/NextGENe.html Category: Integrated solutions

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