Readaligner

Application data
Principal bioinformatics method(s)	Read mapping
Created at	University of Helsinki
Maintained?	Maybe

Summary: A tool for mapping (short) DNA reads into reference sequences.

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Features

• Align reads using either k-mismatches or k-errors (mismatches, insertions and deletions) model.
• Algorithms are based on Burrows-Wheeler transform and backward backtracking.
• Includes a novel data structure called the rotation index that finds alignments with higher number of mismatches in feasible time (but requires a larger index and fixed length query reads).

Links

• Readaligner Homepage [ edit link ]

• Add a Link

References

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