Phred Phrap Consed Cross match

Application data
Principal bioinformatics method(s)	Alignments, Assembly, Basecaller, Smith-Waterman
Technology	Sanger
Maintained?	Yes
Input format(s)	AB1
Output format(s)	FASTA

Summary: The phred software reads DNA sequencing trace files, calls bases, and assigns a quality value to each called base. Phrap is a program for assembling shotgun DNA sequence data. Cross_match is a general purpose utility for comparing any two DNA sequence sets using a 'banded' version of swat. Consed/Autofinish is a tool for viewing, editing, and finishing sequence assemblies created with phrap.

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See Phred, Phrap, Cross match and Consed.

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