TopHat

Application data
Biological application domain(s)	RNA-Seq
Maintained?	Maybe

Summary: TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons.

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Link: http://tophat.cbcb.umd.edu/ Category: RNAseq