Shore
Revision as of 10:32, 7 September 2011 by Andreas.sjodin (talk | contribs)
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Application data |
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| Biological application domain(s) | Structural variants, SNP discovery |
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| Principal bioinformatics method(s) | SNP discovery |
| Created at | Max Planck Institute |
| Maintained? | Yes |
| Operating system(s) | Linux, Mac OS X, POSIX |
Summary: Analysis suite for Illumina short read data.
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SHORE, for Short Read, is a mapping and analysis pipeline for short DNA sequences produced on a Illumina Genome Analyzer. It is designed for projects whose analysis strategy involves mapping of reads to a reference sequence. This reference sequence does not necessarily have to be from the same species, since weighted and gapped alignments allow for accuracy even in diverged regions.
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