ContEst

Application data
Principal bioinformatics method(s)	Sequencing Quality Control
Maintained?	Maybe
Programming language(s)	Java
Licence	BSD

Summary: GATK tool to estimate amount of cross-individual contaminating sequence in a dataset

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Description

Cross-contamination of samples in a large sequencing facility is inevitable, even with elaborate safeguards. ContEst estimates the degree of such contamination in a sequencing dataset.

Links

• ContEst Source code [ edit link ]
• ContEst Homepage [ edit link ]

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References

1. . 2011. Bioinformatics

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