MUMmer

Application data
Maintained?	Maybe

Summary: MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. Released as a package providing an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools. Version 3.0 was developed by Stefan Kurtz, Adam Phillippy, Arthur L Delcher, Michael Smoot, Martin Shumway, Corina Antonescu and Steven L Salzberg - most of whom are at The Institute for Genomic Research in Maryland, USA. POSIX OS required.

"Error: no local variable "counter" was set." is not a number.

Link: http://mummer.sourceforge.net/ Category: Alignment

[PMID http://www.ncbi.nlm.nih.gov/pubmed/19389736] claims to be interface equivalent, and more memory efficient.