Tripal
Revision as of 23:55, 6 February 2013 by Girlwithglasses (talk | contribs) (Created page with "{{Bioinformatics application |sw summary=Tripal is a |bio domain=Genomics, Genetics |bio method=Visualization, Database interface, |input format=FASTA, GFF3, Chado DB |langu...")
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Application data |
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| Biological application domain(s) | Genomics, Genetics |
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| Principal bioinformatics method(s) | Visualization, Database interface |
| Maintained? | Maybe |
| Input format(s) | FASTA, GFF3, Chado DB |
| Programming language(s) | PHP |
| Software libraries | Drupal |
| Licence | Open Source |
Summary: Tripal is a
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Description
Tripal is a web front end for Chado databases, based on the Drupal content management system. Tripal leverages many of the features of Drupal--ability to search and edit content, detail pages for different types of content, customizable page layouts, and so on--to provide users with an intuitive, flexible interface to a database.
Features and advantages of Tripal:
- Allows rapid development of an online genomic database.
- Site administrators can add non-biological content to their sites and allow editing of content by non-technical users.
- Integrates directly with GMOD Chado.
- Provides visualizations for Chado "modules" such as features, analyses, libraries, stocks, and others.
- Provides an interface for easy editing/updating of data in Chado.
- Provides full text and categorical search capabilities for Chado content.
- Can integrate GMOD tools such as CMap and GBrowse.
- Integrates with powerful Drupal features like Drupal views and panels
- Provides fully customizable PHP-based templates to allow users to change the look and feel of their installation
- Web-based management of Chado (i.e. installation of Chado v1.11 and loading of ontologies)
- Loaders for GFF3 and FASTA format files.
- Provides an API to allow for creation of custom extensions by anyone.
Visit the Tripal website.
Links
References
To add a reference for Tripal, enter the PubMed ID in the field below and click 'Add'.
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