SEED
Application data |
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Biological application domain(s) | Metagenomics |
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Principal bioinformatics method(s) | Sequence clustering |
Technology | Illumina |
Created at | University of California Riverside |
Maintained? | Yes |
Input format(s) | FASTQ |
Programming language(s) | C++ |
Operating system(s) | Mac OS X, Linux, Windows |
Summary: Tool to cluster sequence reads prior to assembly or other operations.
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Description
SEED is a software for clustering large sets of Next Generation Sequences (NGS) with hundreds of millions of reads in a time and memory efficient manner. Its algorithm joins highly similar sequences into clusters that can differ by up to three mismatches and three overhanging residues.
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References
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