SEED
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Application data |
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| Biological application domain(s) | Metagenomics |
|---|---|
| Principal bioinformatics method(s) | Sequence clustering |
| Technology | Illumina |
| Created at | University of California Riverside |
| Maintained? | Yes |
| Input format(s) | FASTQ |
| Programming language(s) | C++ |
| Operating system(s) | Mac OS X, Linux, Windows |
Summary: Tool to cluster sequence reads prior to assembly or other operations.
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Description
SEED is a software for clustering large sets of Next Generation Sequences (NGS) with hundreds of millions of reads in a time and memory efficient manner. Its algorithm joins highly similar sequences into clusters that can differ by up to three mismatches and three overhanging residues.
Links
References
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| Web Search | Wiki Sites | Scientific |
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