19736251
This reference describes RMAP.
| PMID | PMID 19736251 |
|---|---|
| Title | Updates to the RMAP short-read mapping software |
| Year | 2009 |
| Journal | Bioinformatics |
| Author | Smith AD, Chung W, Hodges E, Kendall J, Hannon G, Hicks J, Xuan Z, Zhang MQ |
| Volume | |
| Start page |
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Full text description
Summary: We report on a major new version of the RMAP software for mapping reads from short-read sequencing technology. General improvements to accuracy and space requirements are included, along with novel functionality. Included in the RMAP software package are tools for mapping paired-end reads, mapping using more sophisticated use of quality scores, collecting ambiguous mapping locations and mapping bisulfite treated reads.
Availability: The applications described in this note are available for download at http://www.cmb.usc.edu/people/andrewds/rmap and are distributed as Open Source software under the GPLv3.0. The software has been tested on Linux and OS X platforms.
