20959381
This reference describes SmashCommunity.
| PMID | PMID 20959381 |
|---|---|
| Title | SmashCommunity: A metagenomic annotation and analysis tool. |
| Year | 2010 |
| Journal | Bioinformatics |
| Author | Arumugam M, Harrington ED, Foerstner KU, Raes J, Bork P. |
| Volume | |
| Start page |
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Full text description
SUMMARY: SmashCommunity is a stand-alone metagenomic annotation and analysis pipeline suitable for data from Sanger and 454 sequencing technologies. It supports state-of-the-art software for essential metagenomic tasks such as assembly and gene prediction. It provides tools to estimate the quantitative phylogenetic and functional compositions of metagenomes, to compare compositions of multiple metagenomes and to produce intuitive visual representations of such analyses.
AVAILABILITY: SmashCommunity is freely available at http://www.bork.embl.de/software/smash
