ArrayExpressHTS
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Application data |
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| Biological application domain(s) | RNA-Seq, RNA-Seq quantification |
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| Created at | EBI |
| Maintained? | Maybe |
| Input format(s) | FASTQ |
| Programming language(s) | R |
Summary: R-based pipeline for RNA-Seq data analysis.
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Description
Pre-processing, expression estimation and data quality assessment of high-throughput sequencing transcriptional profiling (RNA-seq) datasets. The pipeline starts from raw sequence files and produces standard Bioconductor R objects containing gene or transcript measurements for downstream analysis along with web reports for data quality assessment. It may be run locally on a user's own computer or remotely on a distributed R-cloud farm at the European Bioinformatics Institute. It can be used to analyse user's own datasets or public RNA-seq datasets from the ArrayExpress Archive.
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References
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