Bison

Application data
Created by	Devon P. Ryan
Biological application domain(s)	Epigenetics, Sequencing, DNA methylation
Principal bioinformatics method(s)	Bisulfite mapping, Read mapping, Methylation calling
Created at	German Center for Neurodegenerative Diseases (DZNE)
Maintained?	Yes
Input format(s)	(Compressed) FASTQ, FASTQ
Output format(s)	BAM, BEDGRAPH
Software features	BAM support, Bisulfite sequencing, MPI
Programming language(s)	C
Software libraries	SAMtools, MPI
Operating system(s)	Unix-like, Linux, Mac OS X

Summary: Bison allows users with access to a computer cluster to rapidly align whole-genome bisulfite sequencing or RRBS reads. It can align both directional and non-directional libraries and uses bowtie2.

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