Blixem

Application data
Created by	Sonnhammer ELL, Durbin R
Biological application domain(s)	Sequence analysis, Phylogenetics
Principal bioinformatics method(s)	Sequence alignment visualisation
Created at	MRC Laboratory of Molecular Biology, Wellcome Trust Sanger Institute
Maintained?	Maybe
Input format(s)	blast output, FASTA
Licence	GPL
Operating system(s)	Linux

Summary: a graphical blast viewer

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Blixem, which stands for "BLast matches In an X-windows Embedded Multiple alignment", is an interactive browser of pairwise Blast matches that have been stacked up in a "master-slave" multiple alignment. It is thus not a 'true' multiple alignment, such as produced by e.g. Clustalw, but a 'one-to-many' alignment. (For an interactive browser of true alignments, see Belvu.)

http://sonnhammer.sbc.su.se/Blixem.html

Links

• Blixem Homepage [ edit link ]

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References

1. . 1994. Comput Appl Biosci.

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