CASHX
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Application data |
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| Created by | James Carrington |
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| Biological application domain(s) | Transcriptomics |
| Principal bioinformatics method(s) | Read mapping |
| Created at | Oregon State University |
| Maintained? | Maybe |
Summary: Parse, map, quantify and manage large quantities of short-read sequence data.
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The Cache ASsisted Hash Search with Xor logic (CASHX) Pipeline can be used to parse, map, quantify and manage large quantities of short-read sequence data. CASHX is a set of tools that can be used together, or as independent modules on their own. The reference genome alignment tools can be used with any reference sequence in fasta format. The pipeline was designed and tested using Arabidopsis thaliana small RNA reads generated using an Illumina 1G.
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