CLEVER
Application data |
|
Created by | Tobias Marschall |
---|---|
Biological application domain(s) | Genomics, Structural variation, Copy number estimation |
Technology | Any, Illumina |
Created at | CWI Amsterdam |
Maintained? | Yes |
Input format(s) | BAM |
Output format(s) | Tab separated |
Software features | command line |
Programming language(s) | C++, Python |
Software libraries | BamTools, Boost |
Licence | GPLv3 |
Operating system(s) | any |
Contact: | clever-toolkit@googlegroups.com |
Summary: CLEVER is a tool to discover structural variations such as (larger) insertions and deletions in genomes from paired-end sequencing reads.
"Error: no local variable "counter" was set." is not a number.
Description
CLEVER (CLique Enumerating Variant findER) is an internal segment size based approach, which organizes all reads (including concordant ones) into a read alignment graph where max-cliques represent maximal contradiction-free groups of alignments. A specifically engineered algorithm then enumerates all max-cliques and statistically evaluates them for their potential to reflect insertions or deletions (indels).
Links
References
none specified
To add a reference for CLEVER, enter the PubMed ID in the field below and click 'Add'.
Search for "CLEVER" in the SEQanswers forum / BioStar or:
Web Search | Wiki Sites | Scientific |
---|---|---|