CNB MetaGenomics tools
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Application data |
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| Created by | Jose R Valverde |
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| Biological application domain(s) | Metagenomics, Sequencing |
| Technology | 454, Illumina |
| Created at | CNB/CSIC |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ |
| Programming language(s) | Bash, Perl, Python, C |
| Licence | EU-GPL |
| Operating system(s) | Linux, Unix-like, POSIX |
Summary: A number of tools and meta-tools developed at CNB/CSIC for the analysis of metagenomics data (some rely on QIIME).
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Description
These is a growing number of tools being employed at the Scientific Computing Service of CNB/CSIC for the analysis of metagenomics data. It consists mostly of "meta-tools", i. e. tools to process and manage other tools that do the actual work. It currently contains tools to automate rarefaction analysis using QIIME, post-process Otupipe results, generate population distributions, split files by REGEXP context, etc...
Links
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References
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