CORAL (Contig Ordering Algorithm)
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Application data |
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| Created by | Teague K |
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| Principal bioinformatics method(s) | Sequence error correction |
| Created at | Canada's Michael Smith Genome Sciences Centre |
| Maintained? | Maybe |
| Programming language(s) | Java |
Summary: An algorithm has been developed to order fingerprinted clones within contigs.
"Error: no local variable "counter" was set." is not a number.
Description
Main features:
- variable tolerance
- band confirmation
- band accounting, shared bands
- canonical clones identification, based on “fat band” technology
- Two stages burying procedure
- Contig extension algorithm based on “best friend” determination
- Contig evaluation functions, based on quantity of unconfirmed bands in the middle clone, pairwise comparison and Sulston score
- ability to work with an FPC-file through iCE import-export functions
Links
References
none specified
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