CRAC
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Application data |
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| Created by | Philippe N, Salson M, Commes T, Rivals E |
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| Biological application domain(s) | RNA-Seq quantification, RNA-Seq alignment, Alternative splicing, Gene structure, SNP detection, Indel detection |
| Principal bioinformatics method(s) | Read mapping, Genome indexing (Burrows-Wheeler) |
| Technology | Illumina, 454, Ion Torrent |
| Created at | Institut de Biologie Computationnelle, Institut de recherche en biothérapie (INSERM), Laboratoire d'informatique fondamentale de Lille, Laboratoire d'informatique de robotique et de microélectronique de Montpellier |
| Maintained? | Yes |
| Input format(s) | (C)FAST(A/Q) |
| Output format(s) | SAM (or custom) |
| Programming language(s) | C++ |
| Licence | CeCILL |
| Operating system(s) | Linux, Linux 64, Mac OS X |
Summary: CRAC is a mapping software specialized for RNA-Seq data. It detects mutations, indels, splice or fusion junctions in each single read.
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Description
CRAC is designed to find splice junctions, fusion junctions, SNVs, indels in reads. It focuses on the unique location of a read. It performs particularly well on long reads. It is designed for resequencing projects and is therefore able to map reads coming from the same species or a close one.
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