CRAVAT
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Application data |
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| Biological application domain(s) | Genomics, Genetics, Genetic variation |
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| Principal bioinformatics method(s) | Annotation, Variant prioritisation, Sequence annotation, SNP annotation, Variant classification |
| Created at | Johns Hopkins University |
| Maintained? | Yes |
| Input format(s) | VCF, TSV |
| Output format(s) | TSV |
| Software version | 4.1 |
| Software features | Gene-based annotation, Detailed Reports, Easy-to-use point-and-click web interface, GUI, HTML5 canvas graphics, Identify effects of SNPs on transcripts, Interactive, Multiple replicates information used; automated pipeline; easy genomic annotation; finding hotspots;, SNP annotation, User-friendly, User Management, Variant annotation and analysis |
| Interface type(s) | Web UI, HTTP WS, API |
| Resource type(s) | Tool"Tool" is not in the list (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, ...) of allowed values for the "Resource type" property., Service"Service" is not in the list (Command-line tool, Web application, Desktop application, Script, Suite, Workbench, Database portal, Workflow, Plug-in, Library, ...) of allowed values for the "Resource type" property. |
| Operating system(s) | Web, Linux |
Summary: CRAVAT is a web-based resource for cancer-related analysis of genomic variants (single base substitutions and indels). CRAVAT provides scoring, sorting, filtering, and interactive visualizations to assist with identification of important variants.
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Description
CRAVAT is a web server with simple interface where cancer-related analysis of variants are performed.
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