Cistrome
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Application data |
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| Biological application domain(s) | ChIP-on-chip, ChIP-seq |
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| Created at | Harvard |
| Maintained? | Yes |
| Programming language(s) | Python |
| Interface type(s) | Web UI |
| Resource type(s) | Web service |
Summary: Galaxy-based web service for analysis of ChIP data
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Description
Cistrome is defined as the set of cis-acting targets of a trans-acting factor on a genome scale. Our Cistrome project is to integrate ChIP-chip/seq data on cistrome and standard analysis pipelines and provide users a userfriendly, powerful and flexible web interface to access the data and pipelines.
Our Cistrome project has two major components -- Data Collection (DC) module and Analysis pipeline (AP) module. The Data Collection module aims to manage the public available ChIP-chip and ChIP-seq data sets we collected from publications. Also, user can export their own data from Analysis pipeline module and publish it in Data Collection module, or import public data to Analysis pipeline. The aim for Analysis pipeline module is to organize the data and analysis tools in a pipeline for user, and provide user a dry-lab workbench to process their own private data. Users can choose and package their private data and publish them into Cistrome later.
Links
References
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