ClustDB

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Application data

Maintained? Maybe
Input format(s) FASTA, GenBank, EMBL
Operating system(s) Linux

Summary: A powerful tool for exact sequence matching

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Description

The command line program ClustDB combines

  • a novel count sort algorithm performed in linear time and on the place,
  • efficient data reduction during computation
  • fast low level UNIX disk operations

into a powerful tool for exact sequence matching. The tool allows for studying large sets of sequences rather than one very long concatenated sequence.



Links


References

  1. . 2007. BMC Bioinformatics


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