DNAA
|
Application data |
|
| Created by | Homer N |
|---|---|
| Biological application domain(s) | Structural variation, SNP detection, DNA methylation |
| Principal bioinformatics method(s) | Statistical calculation, Sequencing quality control, Modelling and simulation |
| Technology | ABI SOLiD, Illumina, 454 |
| Maintained? | Maybe |
| Input format(s) | SAM, BAM |
| Licence | GPL |
Summary: DNAA (DNA Analysis) software for analysis of Next-Generation Sequencing data.
"Error: no local variable "counter" was set." is not a number.
DNAA complements BFAST.
It has a number of utilities, including:
- Calculate various statistics from alignment files in the SAM format (see SAMtools).
- Calculate distribution of paired end distances (dbampairedenddist)
- Assist BFAST with bisulfite methylation analysis (dmethyl/dmethylbaf))
- Detecting structural variants (dstructure, dtranslocations)
- Filter BAM files (dbamfilter, dbammetric)
- Estimate error distributions (dbamerrordist)
- Create whole-genome simulated sequence data (wgsim)
- Analyze various possible encoding schemes for ABI SOLiD data.
- Other utilities in development.
Links
References
none specified
To add a reference for DNAA, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "DNAA" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
