ERANGE
|
Application data |
|
| Biological application domain(s) | RNA-Seq alignment, RNA-Seq quantification, ChIP-seq, DNA transcription |
|---|---|
| Created at | Caltech |
| Maintained? | Yes |
| Software features | RNAseq analysis, Chipseq analysis |
| Programming language(s) | Python |
| Contact: | sau@caltech.edu |
Summary: ERANGE is a Python package for doing RNA-seq and ChIP-seq.
"Error: no local variable "counter" was set." is not a number.
ERANGE is a descendant of the ChIPSeq mini peak finder (Johnson, 2007). In particular, the RNAseq analysis uses some of the very same code to access Cistematic. Version 2.0 is the first released in the wild and is "Bed"-centric. In particular, it is not optimized for speed!
Links
References
To add a reference for ERANGE, enter the PubMed ID in the field below and click 'Add'.
[ edit box ]
Search for "ERANGE" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
