FeatureCounts
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Application data |
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| Created by | Wei Shi and Yang Liao |
|---|---|
| Biological application domain(s) | Next Generation Sequencing |
| Principal bioinformatics method(s) | Read summarisation |
| Technology | Illumina, 454, ABI SOLiD, Ion Torrent |
| Created at | Australia
The Walter and Eliza Hall Institute |
| Maintained? | Yes |
| Input format(s) | SAM/BAM |
| Output format(s) | an R List object (in R) or a text file including read counts (in command line) |
| Software features | read summarisation |
| Programming language(s) | R, C |
| Licence | GPLv3 |
| Operating system(s) | Linux 64, Mac OS X, Mac OS X; x86 64 |
Summary: featureCounts is a very efficient read quantifier. It can be used to summarize RNA-seq reads and gDNA-seq reads to a variety of genomic features such as genes, exons, promoters, gene bodies and genomic bins. It is included in the Bioconductor Rsubread package and also in the SourceForge Subread package.
"Error: no local variable "counter" was set." is not a number.
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