GEM library

Application data
Principal bioinformatics method(s)	Read mapping
Maintained?	No
Output format(s)	GFF, BED, Wiggle, SAM
Programming language(s)	C, Python, OCaml
Resource type(s)	library
Licence	GPLv3

Summary: A set of very optimized tools for indexing/querying huge genomes/files. Provided so far: a very fast exact mapper, and an unconstrained split-mapper

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• Currently only a binary pre-release (Mac OS X, Linux 64) is available.
• The source code that is available via CVS seems to be very incomplete.

Links

• GEM library Homepage [ edit link ]

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References

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