GPSeq

Application data
Biological application domain(s)	RNA-Seq quantification
Maintained?	Maybe
Programming language(s)	R, C

Summary: Analyze RNA-seq data to estimate gene and exon expression, identify differentially expressed genes, and differentially spliced exons

"Error: no local variable "counter" was set." is not a number.

Description

Implements a two-parameter generalized Poisson (GP) model to the position-level read counts. We show that the GP model fits the data much better than the traditional Poisson model. Based on the GP model, we can better estimate gene or exon expression, perform a more reasonable normalization across different samples, and improve the identification of differentially expressed genes and the identification of differentially spliced exons.

Links

• GPSeq Homepage [ edit link ]

• Add a Link

References

1. . 2010. Nucleic Acids Research

To add a reference for GPSeq, enter the PubMed ID in the field below and click 'Add'.

 

[ edit box ]

Search for "GPSeq" in the SEQanswers forum / BioStar or:

Web Search	Wiki Sites	Scientific
Google. Bioinformatics journals Clusty	WikiPedia MetaBase BioPedia OpenWetWare bifx wiki	PubMed Europe PMC ScientificCommons.org