Genomedata
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Application data |
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| Created by | Hoffman MM, Buske OJ, Noble WS |
|---|---|
| Biological application domain(s) | storage |
| Principal bioinformatics method(s) | signal |
| Technology | Any |
| Created at | University of Washington |
| Maintained? | Yes |
| Input format(s) | bedGraph, wiggle, BED |
| Output format(s) | Genomedata (HDF5) |
| Programming language(s) | Python, C |
| Licence | GPL |
| Operating system(s) | Linux, Mac OS X |
Summary: Genomedata is a format for efficient storage of multiple tracks of numeric data anchored to a genome. The format allows fast random access to hundreds of gigabytes of data, while retaining a small disk space footprint.
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Description
Genomedata is a format for efficient storage of multiple tracks of numeric data anchored to a genome. The format allows fast random access to hundreds of gigabytes of data, while retaining a small disk space footprint. We have also developed utilities to load data into this format. Retrieving data from this format is more than 2900 times faster than a naive approach using wiggle files.
Links
- Genomedata Homepage [ edit link ]
- Genomedata Manual [ edit link ]
- Genomedata Mailing list [ edit link ]
- Genomedata Source code [ edit link ]
- Genomedata Publication full text [ edit link ]
References
none specified
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