Integrated Genome Browser
|
Application data |
|
| Created by | Genoviz Project |
|---|---|
| Biological application domain(s) | Genomics |
| Principal bioinformatics method(s) | Visualisation |
| Technology | Sanger, Illumina, Affymetrix, 454 |
| Created at | Genoviz Project |
| Maintained? | Yes |
| Input format(s) | BAM, BED, PSL, GFF |
| Output format(s) | various image file formats |
| Programming language(s) | Java |
| Interface type(s) | Desktop GUI |
| Resource type(s) | Desktop application |
| Licence | Open Source |
| Operating system(s) | platform-independent |
Summary: Visualisation software for next-generation genomics
"Error: no local variable "counter" was set." is not a number.
Description
Integrated Genome Browser is a highly interactive, open source desktop genome viewer implemented in Java that can display short read alignments output from BowTie and TopHat, output from the blat EST alignment program (PSL), BED files from the UCSC Table Browser, and many variations on GFF. IGB also can display data from tiling array experiments. IGB was first developed at Affymetrix and released in 2003, but since 2008 has been developed and supported by the Loraine Lab at UNC Charlotte together with a growing community of developers. IGB is open source and free. To download IGB, view screencasts, or read documentation, visit http://www.bioviz.org/igb.
Links
References
none specified
To add a reference for Integrated Genome Browser, enter the PubMed ID in the field below and click 'Add'.
Search for "Integrated Genome Browser" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
