JBrowse
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Application data |
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| Principal bioinformatics method(s) | Visualisation |
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| Created at | Holmes lab at UC Berkeley |
| Maintained? | Yes |
| Input format(s) | GFF3, BED, FASTA, Wiggle, BigWig, BAM, and more! |
| Programming language(s) | Perl, JavaScript |
| Licence | Open Source |
| Operating system(s) | browser based |
| Contact: | gmod-ajax@lists.sourceforge.net |
Summary: Slick, speedy genome browser with a responsive and dynamic AJAX interface for visualization of genome data. Being developed by the GMOD project as a successor to GBrowse.
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Description
JBrowse is a genome browser with a fully dynamic AJAX interface, being developed as the eventual successor to GBrowse. It is very fast and scales well to large datasets. JBrowse does almost all of its work directly in the user's web browser, with minimal requirements for the server.
- Fast, smooth scrolling and zooming. Explore your genome with unparalleled speed.
- Scales easily to multi-gigabase genomes and deep-coverage sequencing.
- Supports GFF3, BED, FASTA, Wiggle, BigWig, BAM, and more.
- Very light server resource requirements. Serve huge datasets from a single low-cost cloud instance.
JBrowse is free, open-source software and is available from the GMOD website.
Links
References
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| Web Search | Wiki Sites | Scientific |
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