MiRCat
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Application data |
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| Created by | Stocks MB, Mapleson D, Moxon S |
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| Biological application domain(s) | Workflows |
| Principal bioinformatics method(s) | microRNA detection |
| Technology | Illumina, 454 |
| Created at | University of East Anglia |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ |
| Output format(s) | csv, txt, FASTA, Various image file formats |
| Software features | Detection and prediction of known or novel miRNAs, secondary structure generation |
| Programming language(s) | Java |
| Licence | Custom Licence |
| Operating system(s) | Linux 64, Windows, Mac OS X |
Summary: Predicts mature miRNAs and their precursors from an sRNA dataset and a genome.
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Description
Part of the UEA sRNA Workbench freely available at:
http://srna-workbench.cmp.uea.ac.uk
miRCat (miRNA Categorisation): predicts mature miRNAs and their precursors from an sRNA dataset and a genome. Users are presented with a table containing details of predicted miRNA candidates as well as their precursors. miRNA candidates are reported as they are discovered allowing users to immediately begin down-stream analysis. Users can click on any predicted miRNA and generate a secondary structure plot with the miRNA and miRNA* (if present) highlighted. miRNAs in miRBase are also reported as such.
Links
References
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| Web Search | Wiki Sites | Scientific |
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