MiRanalyzer

Application data
Biological application domain(s)	Regulatory RNA
Maintained?	Maybe
Software features	Annotation of micro RNA, differential expression
Programming language(s)	Java, Perl
Operating system(s)	browser based

Summary: Web-server for identifying and analyzing miRNA in next-gen sequencing experiments

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MiRanalyzer is a webserver that comes with more than 30 genomes preloaded, against which a user can analysze short read data. Short read data needs to be in a special format where either the read sequence is given in one column and the number of occurrences in a second column, or in a multifasta file where the description field holds the number of counts. The data is then investigated for known micro RNAs and new micro RNAs are detected.In addition differential expression is detected using DESeq.

Links

• MiRanalyzer Homepage [ edit link ]
• MiRanalyzer Manual [ edit link ]

• Add a Link

References

1. . 2009. Nucleic Acids Research
2. . 2011. Nucleic Acids Research

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