MrFAST

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Application data

Created by Can Alkan, Fereydoun Hormozdiari, Faraz Hach, Farhad Hormozdiari
Biological application domain(s) Genomics, Read alignment
Principal bioinformatics method(s) Read alignment
Technology Illumina
Created at University of Washington

Simon Fraser University

Maintained? Yes
Input format(s) FASTA, FASTQ
Output format(s) SAM, DIVET
Programming language(s) C
Licence BSD
Operating system(s) UNIX

Summary: mrFAST is designed to map short reads generated with the Illumina platform to reference genome assemblies; in a fast and memory-efficient manner.

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Description

Links


References

  1. . 2009. Nature Genetics


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