MrsFAST
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Application data |
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| Created by | Faraz Hach, Fereydoun Hormozdiar, Can Alkan, Farhad Hormozdiari |
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| Biological application domain(s) | Genomics |
| Principal bioinformatics method(s) | Read alignment, Mapping |
| Technology | Illumina |
| Created at | Simon Fraser University
University of Washington |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ |
| Output format(s) | SAM, DIVET |
| Programming language(s) | C |
| Licence | BSD |
| Operating system(s) | UNIX |
Summary: mrsFAST is a micro-read substitution-only Fast Alignment Search Tool. mrsFAST is a cache-oblivous short read mapper that optimizes cache usage to get higher performance.
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Description
Following Features are supported
- Mistmatches, No indels
- Paired-end Mapping Mode
- Bisulfite Mapping Mode (see version 1.2.6.4)
- Discordant Paired-end Mapping Mode (to be used in conjunction with VariationHunter)
Links
- MrsFAST Source code [ edit link ]
- MrsFAST Related [ edit link ]
- MrsFAST Related [ edit link ]
- MrsFAST Related [ edit link ]
References
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