Ngs.plot
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Application data |
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| Created by | Li SHEN, Ningyi SHAO, Xiaochuan LIU |
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| Biological application domain(s) | Epigenomics, Transcriptomics |
| Principal bioinformatics method(s) | Visualisation |
| Technology | Any sequencing platform |
| Created at | Icanh School of Medicine at Mount Sinai |
| Maintained? | Yes |
| Input format(s) | BAM |
| Output format(s) | PDF, ZIP |
| Software features | Data Visualisation |
| Programming language(s) | R, Python |
| Licence | GPL (>= 3) |
| Operating system(s) | All |
| Contact: | ngsplot-discuss@googlegroups.com |
Summary: ngs.plot is a program that allows you to easily visualize your next-generation sequencing (NGS) samples at functional genomic regions. The signature advantage of ngs.plot is that it collects a large database of functional elements for many genomes. A user can ask for a functionally important region to be displayed in one command. It handles large sequencing data efficiently and has only modest memory requirement. A web-based version (integrated into Galaxy) is also available for the ones who are allergic to terminals.
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