Novocraft
|
Application data |
|
| Created by | Colin Hercus |
|---|---|
| Biological application domain(s) | Genomics, Whole genome resequencing, RNA-Seq alignment, ChIP-seq, Regulatory RNA |
| Principal bioinformatics method(s) | Read mapping |
| Technology | Illumina, ABI SOLiD, Helicos |
| Created at | Novocraft Technologies Sdn. Bhd. Kuala Lumpur, Malaysia |
| Maintained? | Yes |
| Input format(s) | FASTA, FASTQ, fasta.gz, CSFASTA/CSQUAL (ABI SOLiD) |
| Output format(s) | SAM, Delimited Text, TXT |
| Software features | Bisulfite sequencing, Mate-pair/jumping libraries, parallel execution, insertions/deletions, SAM format output, paired-end, Bisulfite sequencing, colourspace, MPI |
| Programming language(s) | C++ |
| Licence | Commercial, Freeware |
| Operating system(s) | Mac OS X, Linux 64 |
Summary: Novoalign is a program for mapping short reads from the Illumina/SOLiD sequencing platform(s) to a reference genome.
"Error: no local variable "counter" was set." is not a number.
Novoalign is a fast and accurate short read alignment tool for mapping large amounts of sequencing reads to a reference genome. The software is used for mapping reads from the Illumina and SOLiD sequencing platforms.
NovoalignMPI is our cluster-aware solution that supports parallel execution of alignment jobs across a network of servers using the MPICH2 interface.
Availability
The software is free to academic/not-for-profit organizations whilst a small licensing fee is charged for commercial or licensed versions.
Please visit novocraft.com or contact sales at novocraft dot com for more information.
Links
References
To add a reference for Novocraft, enter the PubMed ID in the field below and click 'Add'.
Search for "Novocraft" in the SEQanswers forum / BioStar or:
| Web Search | Wiki Sites | Scientific |
|---|---|---|
