PE-Assembler
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Application data |
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| Biological application domain(s) | Sequence assembly (de novo assembly) |
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| Principal bioinformatics method(s) | Scaffolding |
| Maintained? | Yes |
| Programming language(s) | C++ |
Summary: A simple 3' extension approach to assembling paired-end reads and capable of parallelization
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Description
PE-Assembler implements a method that eschews the traditional graph based approach in favour of a simple 3’ extension approach that has potential to be massively parallelized. It is able to obtain assemblies that are more contiguous, complete and less error prone compared to existing methods.
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References
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