PanGEA

Application data
Biological application domain(s)	RNA-Seq, DNA transcription, SNP detection
Technology	454
Maintained?	Maybe
Programming language(s)	Perl
Interface type(s)	Command line
Resource type(s)	Command-line tool
Licence	Mozilla Public License

Summary: Tool which enables a fast and user-friendly analysis of allele specific gene expression using the 454 technology.

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PanGEA allows mapping of 454-ESTs to genes or whole genomes, displaying gene expression profiles, identification of SNPs and the quantification of allele specific gene expression. The intuitive GUI of PanGEA facilitates a flexible and interactive analysis of the data. PanGEA additionally implements a modification of the Smith-Waterman algorithm which deals with incorrect estimates of homopolymer length as occuring in the 454 technology

Links

• PanGEA Homepage [ edit link ]

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References

1. . 2009. BMC Bioinformatics

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