Pindel
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Application data |
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| Created by | Kai Ye |
|---|---|
| Biological application domain(s) | Indel detection, Structural variation |
| Principal bioinformatics method(s) | Split-read mapping, Read mapping, Localised reassembly |
| Technology | Illumina |
| Created at | EBI |
| Maintained? | Yes |
| Input format(s) | FASTQ, BAM |
| Output format(s) | gapped alignment |
| Programming language(s) | C++ |
| Operating system(s) | Linux, Mac OS X, Windows |
Summary: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired end short reads.
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