ProbeMatch

Application data
Principal bioinformatics method(s)	Mapping
Technology	Illumina
Created at	University of Wisconsin-Madison
Maintained?	No
Input format(s)	FASTA
Operating system(s)	Linux, Mac OS X

Summary: Matches a large set of oligonucleotide sequences against a genome database using gapped alignments

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ProbeMatch is a sequence alignment program designed for matching a large set of oligonucleotide sequences against a genome database using gapped alignments. Unlike existing tools such as ELAND and MAQ which only perform ungapped alignments allowing at most 2-3 mismatches, ProbeMatch generates both ungapped and gapped alignments allowing up to 3 errors including insertion, deletion, and mismatch.

Superseeded by WHAM

Links

• ProbeMatch Homepage [ edit link ]

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References

1. . 2009. Bioinformatics

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